Package: WhiteLabRt
Type: Package
Title: Novel Methods for Reproduction Number Estimation,
        Back-Calculation, and Forecasting
Version: 1.01
Date: 2024-07-23
Authors@R: 
    c(person("Chad", "Milando", , "cmilando@bu.edu", role = c("aut", "cre")),
      person(given = "Tenglong", family = "Li", role = "ctb"),
      person(given = "Zhenwei", family = "Zhou", role = "ctb"),
      person(given = "Laura", family = "White", role = "ctb"))
Maintainer: Chad Milando <cmilando@bu.edu>
Description: A collection of functions related to novel methods for
        estimating R(t), created by the lab of Professor Laura White.
        Currently implemented methods include two-step Bayesian
        back-calculation and now-casting for line-list data with
        missing reporting delays, adapted in 'STAN' from Li (2021)
        <doi:10.1371/journal.pcbi.1009210>, and calculation of
        time-varying reproduction number assuming a flux between
        various adjacent states, adapted into 'STAN' from Zhou (2021)
        <doi:10.1371/journal.pcbi.1010434>.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Biarch: true
Depends: R (>= 3.4.0)
Imports: methods, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), rstan (>=
        2.18.1), rstantools (>= 2.4.0)
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make
Suggests: knitr, rmarkdown
Language: en-US
LazyData: true
VignetteBuilder: knitr
Config/pak/sysreqs: make
Repository: https://cmilando.r-universe.dev
Date/Publication: 2025-03-17 08:56:35 UTC
RemoteUrl: https://github.com/cmilando/whitelabrt
RemoteRef: HEAD
RemoteSha: 7ffe63120851b5e033fa09928af2e591acbfeb6d
NeedsCompilation: yes
Packaged: 2026-07-05 09:41:06 UTC; root
Author: Chad Milando [aut, cre],
  Tenglong Li [ctb],
  Zhenwei Zhou [ctb],
  Laura White [ctb]